MmuEX6049148 @ mm10
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76307073-76318094:-
Coord C1 exon
chr10:76317867-76318094
Coord A exon
chr10:76313176-76313304
Coord C2 exon
chr10:76307073-76307192
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTCTCAAACGCCAGATC
3' ss Score
6.3
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACACGTCATCTGCCTCAGAAGATGAGGGCTCTTTACGGCGACCTGGGCGACTCACCTCCACTCTGCTCCAGAGCCATTCCGGCATCGAGCCCTGGCTCGACAGGGTCATTCAGGGCTCCTCCACTTCATCCTCTGCATCCTCCACCTCATCCCACCCGGGAGGGAGACCTGCTGCTGCTCCCAGTGCCTCCACTGCGCTCGCAGGCCTCACGGCCCACGCCCACATAG
Seq A exon
ATCTGCACTCTGCCCCACCGGATGTCACCACTGGGCTTGTGGAGCACTCATCCTACGAGCGTCCCCAGATGGCCTCTGTGCGAGGCATTCCTCGAGGGCACGGCAGGAACGTGCTGGAGACCGCGGACG
Seq C2 exon
GTGTGCCTGTGAACAGCAGAGTGTCCTCCAAAATCCAGCAGCTACTGAACACCCTGAAGAGGCCAAAGCGCCCTCCTCTGAAGGAATTTTTTGTGGATGATTTTGAGGAGTTACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-'7-8,'7-7,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.931 A=1.000 C2=0.415
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTCATCTGCCTCAGAAG
R:
TGGAGGACACTCTGCTGTTCA
Band lengths:
258-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types