RnoEX6062363 @ rn6
Exon Skipping
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13074731-13083082:+
Coord C1 exon
chr20:13074731-13074937
Coord A exon
chr20:13079096-13079224
Coord C2 exon
chr20:13082963-13083082
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTATGTTTTTCAAAAACCAGATC
3' ss Score
4.54
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
ACACGTCATCTGCCTCAGAAGATGAGGGCTCTTTACGGCGACCTGGGCGACTCACCTCCACTCTGCTCCAGAGCCATTCCGGCATCGAGCCCTGGCTCGACAGGGTCATTCAGGGCTCGTCCACTTCATCCTCTGCATCAGGGAGACCTGCTGCTGCTCCCAGTGCCTCCACTGCGCTTGCAGGCCTCACGGCCCACGCCCACATAG
Seq A exon
ATCCGCACTCCGCCCCACCCGATGTTACCACTGGGCTTGTGGAACACTCACACTTCGAGCGTCCACAGATGGCCTCTGTACGAGGTGTTCCTCGAGGGCACGGCAGGAACATGCTGGAGACCGCAGATG
Seq C2 exon
GTGTGCCTGTGAACAGCAGAGTGTCCTCCAAAATCCAGCAGCTATTGAATACCCTGAAGAGGCCAAAACGCCCTCCTCTGAAGGAGTTTTTTGTGGATGATTTTGAGGAGTTACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=1.000 C2=0.463
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTCATCTGCCTCAGAAG
R:
GCTGCTGGATTTTGGAGGACA
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]