DreEX0027037 @ danRer10
Exon Skipping
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27054638-27070523:+
Coord C1 exon
chr24:27054638-27054883
Coord A exon
chr24:27062530-27062655
Coord C2 exon
chr24:27070389-27070523
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCCTTCCCCATCCAGGGC
3' ss Score
11.84
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
GCCTCTCCCCCCTTTCCTCTCTGCCACCCCTGACAGACACCTCGTCCGGCTCGGAGGAGGAGGGCGGCCAGGGTGAGGGAACCCCCACCTCCAGCCAGGGCAGCGTCAGCATGGAGCACTGGATCAGTCGGGCCATCCATCAGGGATCCACCACCTCCTCCTCCTCTTCATCCACACAGAGTGGGGGCAGCGGGGCCGCCGGACGCCTGGCTGACGTTCTGGCTCAAACGCACATGGGCAAATCAG
Seq A exon
GGCCGATTGCTCACCTCTCCTTGAAGAGGAAAACTATGCTGGGCGTAGCAGAGAACGGAAACTCGCTGCGGCGTTCCTGCGAGTTCGGATCAGATCTACTTTGGCCGCCACCATTGGAGTCGGAGG
Seq C2 exon
AGAATCACTCAGCCCCTCCGGATGTCACCACCTACACCTCCGAACATCCCGTTCAGGTGGAGAGGCCACAGGTGTCCACCGTACCCCGGACAACACCCAAATATGGCAACGCCGAACTCATGGAGACCGGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.930 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000137212fB2304
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGAGCACTGGATCAGTC
R:
ATATTTGGGTGTTGTCCGGGG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]