DreEX0027419 @ danRer10
Exon Skipping
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34440863-34445426:-
Coord C1 exon
chr11:34445228-34445426
Coord A exon
chr11:34442712-34442965
Coord C2 exon
chr11:34440863-34441075
Length
254 bp
Sequences
Splice sites
3' ss Seq
CTTTATAACCTTCCATTCAGCCT
3' ss Score
5.59
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TACACAGAGTTACAGAAGCTAAACCGAGACTTTCAGCCTTTTCATGACCTGTGGAAAACAACATCAGATTGGCTGCGATGGCATGAAAGCTGGCTCAATGACCCGCTGGCAGCCATCAACCCTGAACAGCTGGAGCGTAATGTCACTGATGCTTACAAGACTATGCACCAGTGTGTCAAACAGTTTAAAGATCTTCCTG
Seq A exon
CCTGTCAAGAAGTAGCATCTGAAATCCGGACTAAAATTGAAGCATTCCGTCCGTTTATCCCTCTGATCCGAAGCCTGAGGAATCCTGGCATGCGGAATCGCCACTGGGAACTTCTCTCTGAACGTATCAACATAAATATGAGGTCCAGAGCAAATCTGACTTTTTCTCTTTGTCTGGAGTTGGGCCTGCAAGATCATGTGGAGGAAATCACACGCGTGGCTCAGGAAGCTGGAAAAGAATATTCTATCGAGCAA
Seq C2 exon
GCTCTGAACAAGATGGAGGAAGAATGGTCAACAGTGATGTTTGAGGTGATGCCGTATAAAGAGACAGGAACTTACATACTGAAGAGCCCAGATGAAGCATCTCAGCTCCTAGATGACCACATCGTCATGACCCAGAGCATGGCCTTCTCTCCATATAAAAAACCCTTTGAGGAGAGAATCAGCAAGTGGGAAAGTAAACTGAAAATGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115-'22-21,'22-20,23-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PU(15.6=95.5)
A:
PF083938=DHC_N2=FE(20.7=100)
C2:
PF083938=DHC_N2=FE(17.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAGATTGGCTGCGATGG
R:
ATGGAGAGAAGGCCATGCTCT
Band lengths:
293-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]