MmuEX6040521 @ mm9
Exon Skipping
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32113083-32114562:-
Coord C1 exon
chr14:32114364-32114562
Coord A exon
chr14:32113930-32114183
Coord C2 exon
chr14:32113083-32113295
Length
254 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTGCCTACCCGGCAGCCT
3' ss Score
6.08
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TATGACAAGCTCTCAAGAATGGTGAAGGAATTCCAACCATACCTGGACCTCTGGACCACAGCCTCAGACTGGCTGCGGTGGTCTGAGAGCTGGATGAATGATCCTCTGTCAGCCATTGATGCTGAGCAGCTGGAGAAGAATGTCATTGAGTCGTTCAAGACCATGCACAAATGTGTGAAGCAGTTCAAGGACATCCCAG
Seq A exon
CCTGCCAGGAGGTGGCTTTGGATATCCGAACACGCATAGAGGAGTTCAAGCCGTACATCCCGCTGATCCAAGGCCTGCGCAACCCTGGTATGCGGAACCGGCACTGGGAGGTACTGTCCAATGAGATCAACATCAATGTCAGGCCCAAGGCCAACTTGACCTTTGCCCGCTGCCTGGAGATGAACCTTCAAGACCATATTGAGAGCATCAGCAAGGTGGCTGAAGTGGCTGGCAAGGAGTATGCTATTGAACAG
Seq C2 exon
GCACTAGACAAGATGGAGAAGGAGTGGTCATCCATCCTGTTCAACGTGTTGCCCTACAAGGAGACAGACACCTATATCCTCAAGAGCCCAGACGAAGCCTCACAACTGCTCGACGACCACATCGTCATGACTCAGAGTATGTCCTTCTCACCGTACAAGAAACCCTTTGAGCAGCGCATCAACTCCTGGGAGACCAAACTGAAGCTGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-'20-20,'20-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PU(15.8=97.0)
A:
PF083938=DHC_N2=FE(20.4=100)
C2:
PF083938=DHC_N2=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCATTGATGCTGAGCAG
R:
GCTTCAGTTTGGTCTCCCAGG
Band lengths:
296-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: