DreEX0027518 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10389258-10390407:-
Coord C1 exon
chr6:10390246-10390407
Coord A exon
chr6:10389650-10389883
Coord C2 exon
chr6:10389258-10389404
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCTTTTTTTTTTAGCCG
3' ss Score
9.75
5' ss Seq
CAGGTCAAC
5' ss Score
2.31
Exon sequences
Seq C1 exon
GTGGTGCTGTGTTTCTCTCCAGTTGGTTTCACTCTTCGTACACGTGCACGGAAGTTTCCGGCTCTTGTGAACTGCACTGTCATTGACTGGTTTCATCCTTGGCCCCAGCATGCATTGCAGTCCGTCAGCAGCACTTTCATACAAAATATCCCCGACTTGGAG
Seq A exon
CCGGATGTGAGAGTGTCTATTAGTGAGTTTATCTCATTCGCTCACACTTGTGTGAATGAAGTCAGTGTAAAGTATCAGCAGAATGAAAAGCGCTTCAATTACACCACACCCAAGAGCTTCTTGGAGTTCATGAAACTTTACGGCAACCTGCTGGGCTCAAAGAGAACAGAACTGAGACAAAAGACAGAACGCCTGGAGAATGGCCTGCAGAAGCTGCTGACCACGGCATCACAG
Seq C2 exon
GTGGAGGATCTGAAGGCTAAACTGGCCATACAGGAAGTGGAGCTGCATCTAAGAAACACTGATACTGAAGCTCTCATTGCTAAAATTGGCCAGCAGAGTGAGAAACTCAGTCAGGAGAGGAGCGTTGCAGATGCAGAGGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'51-53,'51-52,52-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.143
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
C2:
PF127772=MT=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCTGTGTTTCTCTCCA
R:
ATCTGCAACGCTCCTCTCCT
Band lengths:
294-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]