HsaEX6007389 @ hg38
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21765428-21779104:+
Coord C1 exon
chr7:21765428-21765589
Coord A exon
chr7:21773766-21773999
Coord C2 exon
chr7:21778958-21779104
Length
234 bp
Sequences
Splice sites
3' ss Seq
TGTAATGTTTGTGTTTTCAGCCA
3' ss Score
7.43
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATCATTTTGTGTTTCTCTCCAGTTGGTCGCACGCTGAGAGTTAGAGCTCGGAAGTTCCCAGCCATAGTTAACTGCACGGCTATTGACTGGTTTCATGCGTGGCCGCAGGAGGCTCTGGTCTCCGTCAGCAGGAGGTTCATTGAGGAAACCAAGGGAATTGAG
Seq A exon
CCAGTGCACAAAGACTCTATTAGCCTTTTCATGGCACATGTTCACACCACTGTAAATGAAATGAGTACCAGATATTACCAGAATGAGAGAAGACACAACTATACCACCCCAAAGAGTTTTCTAGAACAAATATCACTGTTTAAGAACCTGTTGAAGAAGAAGCAAAATGAGGTATCCGAGAAAAAAGAACGCCTGGTGAACGGCATCCAAAAGCTAAAAACCACAGCCTCTCAG
Seq C2 exon
GTGGGAGATCTAAAAGCCAGACTTGCCTCTCAAGAAGCCGAGCTGCAACTGAGAAATCATGATGCCGAAGCTCTGATCACAAAGATCGGCCTTCAGACGGAGAAAGTGAGCCGGGAAAAGACCATCGCTGATGCTGAGGAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'85-89,'85-88,86-89=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.064 C2=0.061
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
C2:
PF127772=MT=FE(13.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCTCTCCAGTTGGTCGC
R:
CCTCAGCATCAGCGATGGTC
Band lengths:
292-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains