DreEX6040407 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19437722-19448456:-
Coord C1 exon
chr16:19448295-19448456
Coord A exon
chr16:19441050-19441283
Coord C2 exon
chr16:19437722-19437868
Length
234 bp
Sequences
Splice sites
3' ss Seq
TCTTACTCTTGCCTTTACAGCCG
3' ss Score
10.77
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTCGTGCTATGCATGTCTCCAGTTGGTAATGCTCTGCGCCTGCGTGTCCGGCGTTTCCCGGCTCTGCTGAGCTGCACCACTCTGGACTGGTTCCAGGAATGGCCCCAGGAGGCTCTTCAGTCTGTCAGCTTAAAGTACCTGCAGGAAATCCCAAGTATTGAG
Seq A exon
CCGACCATTTGGGAATCCATCAGTCTTTTCATGGCCCACGCGCACACCAGCGTCAAGCGGGTTAGCGAGCGTTACTGCTGCAACGAGAAGAGGCACAACTACAGCACATCTAAGAGCTTCCTGGAGCAGCTGAGGCTTTACAAGAGTCTACTGGAAAACAGGGAGAAGGAACTGCATCAGAGACTTGACAGGCTTCAGTCTGGCCTTCAGAAAATCAAGAGTACTGCTTCTCAG
Seq C2 exon
GTGGAGGATCTGACAGTAAAGCTGAACTCTCAGGAAGTGGAGCTGACAATGAAGAACCAGGCAGCTGAGGCTCTTATGGCCAGAATTGGCCTGCAGACAGAGAGAGTGAGCCAGAAGAGAGAAGACGCAGACCTGGAGGAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'31-33,'31-32,32-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.265
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
C2:
PF127772=MT=FE(13.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTATGCATGTCTCCAGT
R:
TCCAGGTCTGCGTCTTCTCTC
Band lengths:
297-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]