RnoEX0028421 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145882637-145898505:-
Coord C1 exon
chr6:145898344-145898505
Coord A exon
chr6:145888296-145888529
Coord C2 exon
chr6:145882637-145882783
Length
234 bp
Sequences
Splice sites
3' ss Seq
ATGCGCTGTCTATGTTTCAGCCA
3' ss Score
6.9
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
ATGGTTTTTTGTTTCTCACCGGTTGGTCACACTCTGAGAGTTAGAGCCCGGAAGTTCCCAGCCCTAGTTAACTGCACAGCTATTGACTGGTTTCATGCATGGCCACAGGAAGCTCTGGTCTCAGTCAGCAGGAGGTTTATTGAAGAAATCGAGGGGATTGAG
Seq A exon
CCACAGCACAAAGATTCTATCAGCCTTTTCATGGCGTATGTTCACACCAGTGTAAAGGAAGTAAGTGCCTGGTACTACCAGAACGAGAGGAGGTACAACTACACCACCCCAAGGAGTTTCTTAGAACAAATATCACTGTTTAAGAGCCTGCTGAAGAAGAAGCGAGGAGAGGTGCAGCGGAAGAAGGAGCACCTGGGGAATGGAATCCAGAAGCTGCAGACCACGGCCTCACAG
Seq C2 exon
GTGGGAAATCTGAAGGCCAGGCTGGCCTCTCAAGAAGCTGAGCTGCAGCTCAGAAACCAGGACGCCGAGGCCCTGATCACAAAGATCGGGCTTCAGACGGAGAAAGTGAGCCGGGAAAAGGCCATCGCAGATGCAGAGGAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'72-72,'72-71,73-72
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(19.8=100)
A:
PF127802=AAA_8=PD(18.7=64.1),PF127772=MT=PU(4.3=19.2)
C2:
PF127772=MT=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGTTTCTCACCGGTTGG
R:
CTTTCGCTCCTCTGCATCTGC
Band lengths:
304-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]