DreEX0028068 @ danRer10
Exon Skipping
Gene
ENSDARG00000036915 | dolpp1
Description
dolichyldiphosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-041024-11]
Coordinates
chr21:3739350-3745040:+
Coord C1 exon
chr21:3739350-3739434
Coord A exon
chr21:3741726-3741822
Coord C2 exon
chr21:3744942-3745040
Length
97 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTGTCTCTTTAACAGGTC
3' ss Score
12.22
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATCTCATTTTTCGGGGGTCTGATCATGAACGAGGGCTTAAACTGGCTGCTCAAACACATCCTACAGGAGCCTCGGCCGTGCGGAG
Seq A exon
GTCACAGTTCAGTCACGACAGAGTACGGGATGCCCTCCAGTCACTCGCAGTTCATCTGGTTTTTTGTTGTATACTTTTTTCTTTTTCTTTATTTAAG
Seq C2 exon
AATGCATCAGACGAACAATGCTCGGTGTGTTGAATTGTTATGGCGGCATATATTGTCCATCATGCTACTGGCCGTGGCGTTGTCTGTTTCATACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036915-'2-4,'2-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(21.7=100)
A:
PF0156916=PAP2=FE(24.8=100)
C2:
PF0156916=PAP2=FE(25.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGGGTCTGATCATGAACG
R:
ATGAAACAGACAACGCCACGG
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]