RnoEX0029452 @ rn6
Exon Skipping
Gene
ENSRNOG00000017663 | Dolpp1
Description
dolichyldiphosphatase 1 [Source:RGD Symbol;Acc:1307447]
Coordinates
chr3:8961768-8962288:+
Coord C1 exon
chr3:8961768-8961852
Coord A exon
chr3:8961947-8962046
Coord C2 exon
chr3:8962190-8962288
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTTTTTCTCCCCCAGGCC
3' ss Score
13.29
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATTTCATTCCTCGGGGGACTGGCACTGAATGAGGGTGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCTCGGCCCTGTGGAG
Seq A exon
GCCCACACACAGCAGTGGGCACTAAATACGGGATGCCCTCCAGCCATTCCCAGTTCATGTGGTTCTTCTCTGTCTATTCCTTCCTTTTCTTGTATTTAAG
Seq C2 exon
AATGCACCAAACAAATAACGCCAGGTTCCTGGACTTGCTGTGGAGGCATGTGCTGTCTCTAGGGCTCCTCACCGCGGCCTTTCTAGTCTCCTATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017663_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.9=100)
A:
PF0156916=PAP2=FE(30.6=100)
C2:
PF0156916=PAP2=FE(30.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCATTCCTCGGGGGACTG
R:
TAGGAGACTAGAAAGGCCGCG
Band lengths:
178-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]