DreEX0028177 @ danRer10
Exon Skipping
Gene
ENSDARG00000062083 | dph7
Description
diphthamide biosynthesis 7 [Source:ZFIN;Acc:ZDB-GENE-070410-57]
Coordinates
chr5:24576627-24577490:-
Coord C1 exon
chr5:24577396-24577490
Coord A exon
chr5:24577163-24577320
Coord C2 exon
chr5:24576627-24576699
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCAGTGTTGTGGTTTTCCAGCAG
3' ss Score
6.57
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CAGGGCTCCAGTGGTCTGGAGTGTGAGCTGAGCACAGATTTGGGTCCTGACAGACTGGCCTTGTCTTTAGACTGGTCCACAGGGCGAGGCGAGAG
Seq A exon
CAGTGATGTGCGTGTGGTGTCCAGTGACTCCACTGGCTCTCTCACACTGCTGTCTCTGGGGGAAGCAGATTTAACCGCTGTGTGTCAGTGGAAAGCTCACGAATATGAAGCCTGGATCTCAGCGTTTAGTTACTGGGATACTCAGACTGTGTATTCAG
Seq C2 exon
GTGGTGATGACAGCAAACTAAAGGGCTGGGATCTGAGAATGGGTTGCTCTTCCCCTACTTTCACCAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062083_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040027=WD40=PU(20.0=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCTCCAGTGGTCTG
R:
TGCTGGTGAAAGTAGGGGAAGA
Band lengths:
164-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]