MmuEX6099383 @ mm10
Exon Skipping
Gene
ENSMUSG00000026975 | Dph7
Description
diphthamine biosynethesis 7 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24965560-24968954:+
Coord C1 exon
chr2:24965560-24965654
Coord A exon
chr2:24966502-24966674
Coord C2 exon
chr2:24968885-24968954
Length
173 bp
Sequences
Splice sites
3' ss Seq
TATTGGCTCCTTGTTTGCAGGGC
3' ss Score
7.86
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AACAACAGTTACACCCTGCAGCCAATATCCAGCCTCGCCCTGGATGAGAATTGTCTGTCCTTGTCAATGGATTGGTCCACTGGGAAATCTGTCAG
Seq A exon
GGCCAGAGAACAGCCCTTGAAGATCATTAGCAGTGATTCTAAGGGGCAGTTGCACCTCCTGATGGTGAATGAGGGCACAGCTGAACTACAGCTAGTAGCATCTTGGCCAGCCCATCACTTTGAGGCCTGGATTGCTGCTTTCAATTACTGGCAGACAGAACTCGTGTATTCAG
Seq C2 exon
GGGGAGATGACTGCCTTCTGAGAGGCTGGGACACTAGGATGCTGGGCACACCTGTCTTCACTAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975-'5-11,'5-8,9-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040027=WD40=PU(20.0=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAGTTACACCCTGCAGC
R:
TTTGCTAGTGAAGACAGGTGTGC
Band lengths:
162-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types