DreEX0030071 @ danRer10
Exon Skipping
Gene
ENSDARG00000045066 | entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-58]
Coordinates
chr12:30636062-30641424:-
Coord C1 exon
chr12:30641307-30641424
Coord A exon
chr12:30637993-30638143
Coord C2 exon
chr12:30636062-30636221
Length
151 bp
Sequences
Splice sites
3' ss Seq
AACGTGTTTGTGCCCTGTAGGCA
3' ss Score
8.42
5' ss Seq
CAAGTAATC
5' ss Score
0.66
Exon sequences
Seq C1 exon
TATGGAATAGTCCTGGATGCCGGCTCCTCTCACACCTCTGTGTTTATCTATAAATGGCCAGCAGAGAAAGAGAACAACACAGGCATGGTACAGCAGCATCACACGTGCAATGTTAAAG
Seq A exon
GCAAAGGCATCTCCAGTTACTTCGATAAACCACATGGGGCTGGTGCATCTCTGGAGGAGTGCATGAAGGAGGCCAAGGAGAAAATACCTGCTCACAGACACAGCGAAACCCCTGTCTACCTGGGAGCCACGGCTGGCATGAGACTGCTCAA
Seq C2 exon
GATGGAGGATGAAATGGCCTCAGAAAAAGTGCTTACCTCCGTTGCACATTCACTGAAGACGTACCCCTTCTCCTATCAGGGAGCTCGTATCCTTTCAGGCCAAGAGGAGGGAGCTTTTGGGTGGATTACAGTCAACTACCTTAGTGAAAACTTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045066-'3-6,'3-5,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(25.0=100)
A:
PF0115012=GDA1_CD39=FE(11.9=100)
C2:
PF0115012=GDA1_CD39=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATAGTCCTGGATGCCGG
R:
AATCCACCCAAAAGCTCCCTC
Band lengths:
243-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]