GgaEX1022491 @ galGal3
Exon Skipping
Gene
ENSGALG00000007078 | F1P328_CHICK
Description
NA
Coordinates
chr6:23438185-23440085:+
Coord C1 exon
chr6:23438185-23438302
Coord A exon
chr6:23438951-23439101
Coord C2 exon
chr6:23439926-23440085
Length
151 bp
Sequences
Splice sites
3' ss Seq
AGTCTTCCAATTTCTTGCAGGCC
3' ss Score
8.67
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
TATGGGATTGTGCTAGATGCGGGGTCATCCCACACAAACCTGTACGTGTACGAGTGGCCAGCAGAGAAGGAGAATGACACTGGAGTGGTGCAGCAGGTGGAGGTGTGTAAAGTCGAAG
Seq A exon
GCCCAGGGATCTCAGGTTACTCCCAGACCACAGAGAAGGCAGGTCCCTCTCTGGTGCAGTGCCTCAGACAAGCAGAAGGGGTGATTCCCTTAAAGCAGCACCAAGAGACGCCCGTCTACCTCGGAGCAACTGCTGGCATGCGGCTCCTCAG
Seq C2 exon
GTTGGAAAATAAAGATGCAGCTGAAAAAGTCTTGTCCTCAGTAGAGAAGACACTACGCTCAGCTCCCTTCAATTTCCAGGGCGCCAGAATCATCAGTGGTCAGGAAGAAGGAGCCTATGGATGGATCACCATTAACTACTTACTTGGTAATTTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(13.7=100)
A:
PF0115012=GDA1_CD39=FE(11.5=100)
C2:
PF0115012=GDA1_CD39=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGTGCTAGATGCGGGGTC
R:
GGTGATCCATCCATAGGCTCCT
Band lengths:
243-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]