DreEX0032810 @ danRer10
Exon Skipping
Gene
ENSDARG00000061904 | fhod3b
Description
formin homology 2 domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081028-61]
Coordinates
chr16:18891220-18946034:-
Coord C1 exon
chr16:18945929-18946034
Coord A exon
chr16:18896530-18896624
Coord C2 exon
chr16:18891220-18891331
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTATCTTTATCTTTTTTAGCAC
3' ss Score
9.47
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GATGATAAGGATCTGGTTCATGAGTTTGTGATGGCGGAGGGACTCACATGTCTTATTAAAGTGGGAGCTGAAGCTGATCAAAACTACCAAAACTACATTCTCAGAG
Seq A exon
CACTTGGACAGATCATGCTGTATGTAGATGGAATGAATGGGCTTATCGGACACAATGAAACCGTACAGTGGCTGTACACACTGGTTGGATCAAAG
Seq C2 exon
TTCCGGTTGGTTGTGAAAACTGCTATGAAGCTGCTGCTGGTTTTTGTGGAGTACACCGAGAGCAACGCACCTCTCCTCATCCAAGCCGTCAACAGCGTTGACACCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061904_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(24.3=100)
A:
PF063718=Drf_GBD=FE(21.5=100)
C2:
PF063718=Drf_GBD=PD(10.4=39.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGTTTGTGATGGCGGAGG
R:
GTTGACGGCTTGGATGAGGAG
Band lengths:
180-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]