RnoEX0036022 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17091310-17254858:+
Coord C1 exon
chr18:17091310-17091415
Coord A exon
chr18:17160027-17160121
Coord C2 exon
chr18:17254724-17254858
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCCCTTTGTCTGCAGCAC
3' ss Score
10.68
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GATGACAAGGATTTGGTGCATGAATTCGTCATAGCTGAAGGTCTGACATGTTTGATCAAAGTGGGAGCCGAGGCGGATCAGAACTATCAGAACTACATCCTGAGGG
Seq A exon
CACTGGGTCAGATTATGCTGTATGTGGATGGGATGAATGGCGTCATCAACCACAGCGAGACCATCCAGTGGCTTTACACTCTTGTTGGCTCAAAG
Seq C2 exon
GTCATCGCCAAGTGGCCTTCTCACATCCTCCTTTAGACAGCACCAAGAGTCACTGGCAGCGGAGAGAGAGCGGAGGCGGCAAGAGAGAGAAGAAAGACTGCAGAGGATAGAACGGGAAGAAAGGAACAAATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230_MULTIEX1-1/10=C1-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(25.0=100)
A:
PF063718=Drf_GBD=FE(22.1=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATCAAAGTGGGAGCCGAG
R:
TCCCGTTCTATCCTCTGCAGT
Band lengths:
172-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]