GgaEX0019790 @ galGal3
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
NA
Coordinates
chr2:85543423-85606621:+
Coord C1 exon
chr2:85543423-85543528
Coord A exon
chr2:85580234-85580328
Coord C2 exon
chr2:85606510-85606621
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTTCTTTGCAATAGCCT
3' ss Score
7.24
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GATGACAAGGACTTGGTTCATGAGTTCGTTATCGCTGAAGGCCTGACTTGCCTAATCAAAGTAGGAGCAGAGGCAGACCAGAATTATCAGAACTACATCCTGAGAG
Seq A exon
CCTTGGGCCAGATTATGCTCTACGTTGATGGCATGAATGGAGTAATAAACCATAATGAAACCATCCAATGGCTGTACACACTTATTGGGTCAAAG
Seq C2 exon
TTCCGCCTTGTGGTAAAGACAGCACTGAAGCTGCTGCTTGTATTTGTGGAGTACACTGAATCCAATGCACCACTTTTAATCCAAGCAGTATCTACAGTTGATGAAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124-'5-11,'5-10,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGTTATCGCTGAAGGCCT
R:
TGCTTGGATTAAAAGTGGTGCA
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event