DreEX0033924 @ danRer10
Exon Skipping
Gene
ENSDARG00000031616 | g6pca.1
Description
glucose-6-phosphatase a, catalytic subunit, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-031001-4]
Coordinates
chr12:5995970-6000263:-
Coord C1 exon
chr12:6000163-6000263
Coord A exon
chr12:5998083-5998302
Coord C2 exon
chr12:5995970-5996079
Length
220 bp
Sequences
Splice sites
3' ss Seq
TGATGTGCCTGTCTGGACAGAGA
3' ss Score
6.29
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
CAGTGCAGCCTTGAATAAAGTCCAAGTGGAGCATGACTGAGGGCTGAGGGCTGGACAAAGCCTGACAGGCTCCAGTTTGATCCCCATCGCTGCACCATACG
Seq A exon
AGATGGATCTTCTTCACAGCTGGGGTGTGGAGCTGGCCGTCCACTTACAGATCAAATACCAGGATTATGAGAGCGTGTTTCACTGGGTCTCCTCTCTGGCTGATCTACACACCACCTTCTTTGTGTTTTTCCCCGTCTGGTTTCATCTGCGCAGAGATGTGGCTGTTAAACTCATCTGGGTGGCCGTGGTTGGAGACTGGCTGAACCTCGTCCTAAAGTG
Seq C2 exon
GGTGCTGTTTGGTGAGAGGCCTTACTGGTGGGTGCATGAAACTAAGTTTTATGGCTCAATGAAACATCCCGAACTGCAACAGTTCTCCATGACATGTGAAACTGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031616-'0-3,'0-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0156916=PAP2=PU(14.2=28.8)
C2:
PF0156916=PAP2=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAGCCTTGAATAAAGTCCA
R:
TGGTCCAGTTTCACATGTCATGG
Band lengths:
209-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]