DmeEX6004370 @ dm6
Exon Skipping
Gene
FBgn0031463 | G6P
Description
The gene Glucose-6-Phosphatase is referred to in FlyBase by the symbol DmelG6P (CG15400, FBgn0031463). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 2L:2814336..2815760. Its molecular function is described by: glucose-6-phosphatase activity. It is involved in the biological process described with: gluconeogenesis; glucose 6-phosphate metabolic process. 10 alleles are reported. The phenotype of these alleles manifest in: adult NPF P1 neuron. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed during late larval stages, at stages throughout the pupal period, in adult male stages.
Coordinates
chr2L:2814807-2815760:-
Coord C1 exon
chr2L:2815604-2815760
Coord A exon
chr2L:2815380-2815544
Coord C2 exon
chr2L:2814807-2815305
Length
165 bp
Sequences
Splice sites
3' ss Seq
AAGAGAAATCCATTTTTCAGCTT
3' ss Score
2.03
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ATTTCATATTGGCAGAAAGACTTGAAAATATAAAAGGAGCCAGTTGCTAAAATATTTTAAGACTGAAAACAATGGAGTCGATAGTGCACATTCTTTCGGATGCGTACCATACAACGCTCACGCGGGAGCTTTTCATCAACGAATGGGCTCAGGAACG
Seq A exon
CTTGAGTTTTGGAAGGCCCCTTTGGCATTTTCTCAGCGTTCATTTGGAGCCAAACAAAATGTTCAACATCATTATCCCCCTATGTGGTATCTTCAGTCAGGAAATCCTCGTGCATCTCTTCACGGCATTTACCCTGATTAGCACACTGAACTCCTTCGAAAAATG
Seq C2 exon
GATATATCCGGAGACGCGTCCTTTGTGGTTTCTGCGAGAGCAGTTTGCCAATAATGTGGTTGTAAAGAAACCGGCGGTGGCCTTGGAAAGTCATCAGCTGAGCTGCGAGATGACCGGTGGGCTGCCCTGCGCCCACTCAATGACCTTCACGGTGTTCGTACTCATCCTGGCCTCGTTCTTCTTCGTTCACTGCTGGGATCGCTTTGCTGCGTTGCGCTCTTCCTTCTGCCGCTGCATAATGTACCTGCTGATCATTGGAATGGTGGTCTGTATGTGGCTGAGTCGCCTCTACCTGGCCACCGAGTTTCTGCACCAGTGCATACTGGGAAGTTACCTGGGAATTAGGTCTCTTTGCACCTTTGAGGGAAATGTGAAGTACTTGTTCTCGCGACCACGTCGCTATGCGGTCTCAGCTGTTTTCTTCTTGGGAGGATTGGCATTGTCAGTGTACTATGTGAAGCTGGAACTGAATATCGATCCCCATTGGTCGGTGCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0031463-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0156916=PAP2=PU(13.3=35.7)
C2:
PF0156916=PAP2=PD(86.0=77.2)
Main Inclusion Isoform:
FBpp0111930
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACATTCTTTCGGATGCG
R:
AGAAGAACGAGGCCAGGATGA
Band lengths:
256-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)