MmuEX0019848 @ mm10
Exon Skipping
Gene
ENSMUSG00000034793 | G6pc3
Description
glucose 6 phosphatase, catalytic, 3 [Source:MGI Symbol;Acc:MGI:1915651]
Coordinates
chr11:102189620-102192141:+
Coord C1 exon
chr11:102189620-102189652
Coord A exon
chr11:102189871-102190143
Coord C2 exon
chr11:102192035-102192141
Length
273 bp
Sequences
Splice sites
3' ss Seq
GCCGCTTCATTTCTGCTAAGGTT
3' ss Score
5.22
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
CACGTGGGGCCTTGAGGAAACGCCTTCGCAAAG
Seq A exon
GTTCCTCGACTTGCACCCTACAACGGGCTCCAGGCTAGAGGACTCCTGATTCACCATGGAGTCCACGCTGAGCGCGGGCATCATAATGGCTGAAGCACTACAGAACCGGCTTCCCGGGCTAGAGAATATGTGGCTCTGGGTCACCTTTCTGGGCGATCCTAAGAATCTTTTTCAGTTCTGCTTCCCCGCGGCCTACTACGCCTCCCGCCGCCTGGGCATCTCCGTGCTCTGGATCACCTTCATTGCTGAGTGGCTCAACCTTGTCTTCAAGTG
Seq C2 exon
GTTTCTGTTTGGAGACAGGCCCTTTTGGTGGGTGCATGAATCCGGGTACTCCACCCAGACTCCAATCCAGATTCACCAGTTCCCTTCTTCTTGTGAGACTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034793_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0156916=PAP2=PU(15.8=31.5)
C2:
PF0156916=PAP2=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGGGGCCTTGAGGAAA
R:
CTGGACCAGTCTCACAAGAAGA
Band lengths:
140-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types