MmuEX0019848 @ mm9
Exon Skipping
Gene
ENSMUSG00000034793 | G6pc3
Description
glucose 6 phosphatase, catalytic, 3 [Source:MGI Symbol;Acc:MGI:1915651]
Coordinates
chr11:102050934-102053455:+
Coord C1 exon
chr11:102050934-102050966
Coord A exon
chr11:102051185-102051457
Coord C2 exon
chr11:102053349-102053455
Length
273 bp
Sequences
Splice sites
3' ss Seq
GCCGCTTCATTTCTGCTAAGGTT
3' ss Score
5.22
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
CACGTGGGGCCTTGAGGAAACGCCTTCGCAAAG
Seq A exon
GTTCCTCGACTTGCACCCTACAACGGGCTCCAGGCTAGAGGACTCCTGATTCACCATGGAGTCCACGCTGAGCGCGGGCATCATAATGGCTGAAGCACTACAGAACCGGCTTCCCGGGCTAGAGAATATGTGGCTCTGGGTCACCTTTCTGGGCGATCCTAAGAATCTTTTTCAGTTCTGCTTCCCCGCGGCCTACTACGCCTCCCGCCGCCTGGGCATCTCCGTGCTCTGGATCACCTTCATTGCTGAGTGGCTCAACCTTGTCTTCAAGTG
Seq C2 exon
GTTTCTGTTTGGAGACAGGCCCTTTTGGTGGGTGCATGAATCCGGGTACTCCACCCAGACTCCAATCCAGATTCACCAGTTCCCTTCTTCTTGTGAGACTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034793-'0-8,'0-3,1-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0156916=PAP2=PU(15.8=31.5)
C2:
PF0156916=PAP2=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTGGGGCCTTGAGGAAA
R:
CTGGACCAGTCTCACAAGAAGA
Band lengths:
140-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types