MmuEX1010796 @ mm10
Exon Skipping
Gene
ENSMUSG00000005232 | G6pc2
Description
glucose-6-phosphatase, catalytic, 2 [Source:MGI Symbol;Acc:MGI:1277193]
Coordinates
chr2:69211073-69220892:+
Coord C1 exon
chr2:69211073-69211154
Coord A exon
chr2:69220177-69220250
Coord C2 exon
chr2:69220783-69220892
Length
74 bp
Sequences
Splice sites
3' ss Seq
ACTTCCCACTTTGGTTTCAGTTG
3' ss Score
8.46
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGAGCAGTTTGAAGGAGGCTTGCTCAGTGGATTCGTCAACGGTGTCCAGAGGAATAGAACCAACAGAATACAAATCATGAAG
Seq A exon
TTGAATCAGAATGTTGGAACCAAGATGATCTGGGTAGCGGTCATAGGGGACTGGTTCAATCTCATATTTAAATG
Seq C2 exon
GATATTGTTTGGCCATCGTCCTTACTGGTGGATACAAGAAACTGAGATTTATCCAAATCATTCAAGCCCATGTCTTGAGCAGTTTCCTACTACGTGTGAAACAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005232_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
NA
A:
PF0156916=PAP2=PU(19.5=42.5)
C2:
PF0156916=PAP2=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCTTGCTCAGTGGATTC
R:
CTGGGCCTGTTTCACACGTAG
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types