DreEX0033927 @ danRer10
Exon Skipping
Gene
ENSDARG00000031616 | g6pca.1
Description
glucose-6-phosphatase a, catalytic subunit, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-031001-4]
Coordinates
chr12:5993445-5996079:-
Coord C1 exon
chr12:5995970-5996079
Coord A exon
chr12:5994315-5994420
Coord C2 exon
chr12:5993445-5993560
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATTGTCTGGTTCTCTGTCAGGCA
3' ss Score
6.9
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGTGCTGTTTGGTGAGAGGCCTTACTGGTGGGTGCATGAAACTAAGTTTTATGGCTCAATGAAACATCCCGAACTGCAACAGTTCTCCATGACATGTGAAACTGGACCAG
Seq A exon
GCAGCCCGTCGGGTCATGCCATGGGCTCTGCTGCTGTTGGATATGTGATGATCACAGCGTTGCTTTCAATCCTTGCTGAAAGAAAATTACCTCCTTTAATTTACAG
Seq C2 exon
ACTTGTACAGTTGATGCTGTGGATGTTTCTGGGTTTGGTAGAGTTGCTGGTTTGCATGTCTAGAGTGTATCTGGCCGCTCATTTCCCACACCAAGTAATCTGTGGAGTTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031616_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.0=100)
A:
PF0156916=PAP2=FE(24.0=100)
C2:
PF0156916=PAP2=FE(23.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGTTTGGTGAGAGGC
R:
CTGAAATAACTCCACAGATTACTTGG
Band lengths:
226-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]