DreEX0034306 @ danRer10
Exon Skipping
Gene
ENSDARG00000060631 | garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 (garnl3), mRNA [Source:RefSeq mRNA;Acc:NM_001128527]
Coordinates
chr5:32760517-32767868:-
Coord C1 exon
chr5:32767733-32767868
Coord A exon
chr5:32764362-32764421
Coord C2 exon
chr5:32760517-32760735
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCATCCCTGGTCCAGATT
3' ss Score
7.49
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
TCTGATATCTATTTCATCTCCTCAGCGCCTATAAACTCTGCCTCTAACTGTAGCTCCAGAGACACTAGTTCCCAGAGTTCCCCTCAGACACCCACCGGCTATGAGATGCCTGTCTTCCCTTCACCGCTTGGAGATG
Seq A exon
ATTGTATTCGGATCCCCTACGGCACCAAGCTTTCCCTCTACATGTCTAAAGACTCTGAAG
Seq C2 exon
GTGAAACTCAATCAAAACACATCTATAAGATCCCTCTGAGTAACCTAGTTGGAAGGAGCATAGAAAGGCCCCTCAAGTCTCCTCTGGTCAATAAAGTGCTCACGGCACCGGCCCCCAGCATGACCGGGCCTGCGCCCATGATCGGCAGCACCACCTCCCTCTCGCTGTCTCGCATGGAGATCAAAGAAATTGCCAGCCGCACACGAAAAGAGCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060631_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.143 C2=0.574
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(0.1=0.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCCAGAGTTCCCCTCAG
R:
AGGGGCCTTTCTATGCTCCTT
Band lengths:
143-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]