DreEX0035871 @ danRer10
Exon Skipping
Gene
ENSDARG00000017311 | gpsm2
Description
G-protein signaling modulator 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1169]
Coordinates
chr2:45649612-45657701:-
Coord C1 exon
chr2:45657521-45657701
Coord A exon
chr2:45657182-45657225
Coord C2 exon
chr2:45649612-45649833
Length
44 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGTCGTTTGGTTTAGGTT
3' ss Score
12.11
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
CCGGGTTTGTGTAAAGTTTTGACTCTTAACCGCTTCGATGAGACAAACTGTATTTATTTCGAAGCTAACTCATCTAATACATCCGCTTTTACGACATGTTTGGATGTAATTGATTTTTGTTTGGACCCTGTTGGATGTAAGCGACGAAACCGAGAGCAGGATCCGTGGGGAGTCGAAGGAG
Seq A exon
GTTCGTACGTTACTGAAGTCAGTGTTAACGTTGCCCATTTTGAG
Seq C2 exon
GATGGAGGCGTCCTGTTTGGATCTGGCTCTGGAGGCAGAGCGTCTGTGTAAGGTGGGAGATTACAGCGCCGGTGTTTCGTACTTCGAGGCTGCCATACAGGTTGGCACAGAAGACCTACAGGTTCTAAGCGCCGTCTACAGTCAGCTGGGGAATGCCTACTTCCACCTGCACGACTACAGCAAAGCTCTGGAGTTCCACCACCATGATCTTACACTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017311_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0206410=MAS20=PD(76.9=80.0),PF134241=TPR_12=PU(62.5=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGTAAGCGACGAAACCG
R:
GTATGGCAGCCTCGAAGTACG
Band lengths:
148-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]