DreEX0035872 @ danRer10
Exon Skipping
Gene
ENSDARG00000017311 | gpsm2
Description
G-protein signaling modulator 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1169]
Coordinates
chr2:45649612-45657701:-
Coord C1 exon
chr2:45657521-45657701
Coord A exon
chr2:45654395-45654701
Coord C2 exon
chr2:45649612-45649833
Length
307 bp
Sequences
Splice sites
3' ss Seq
ATCTTGTGTTCTCTTCACAGAGA
3' ss Score
10.41
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCGGGTTTGTGTAAAGTTTTGACTCTTAACCGCTTCGATGAGACAAACTGTATTTATTTCGAAGCTAACTCATCTAATACATCCGCTTTTACGACATGTTTGGATGTAATTGATTTTTGTTTGGACCCTGTTGGATGTAAGCGACGAAACCGAGAGCAGGATCCGTGGGGAGTCGAAGGAG
Seq A exon
AGAGCTCCGGAAGAGTATCCTGGACAAAACGCACATCACACACAAACACACACTTCCCAGCCCCACTGCTGTGGTGAATATTAGCTGAGAGAAACCCCAACTGTTGTGCACTGGATTCCACCATCGGAAAACCACTTTGTAAGGGCAAAAACTTTCAATATTTTGTTCTCTCTGGGACGCACAACTTTTCCCTAATGGATTACTTTCTGGACTTGGCTCGGATCAGCTCTTCATAATGCTCTTCGATGGCTGTGAGCAGTGCAGTGGTTAGCATGCAGAATGAAAACCGAACGTTTGTCCACTACAG
Seq C2 exon
GATGGAGGCGTCCTGTTTGGATCTGGCTCTGGAGGCAGAGCGTCTGTGTAAGGTGGGAGATTACAGCGCCGGTGTTTCGTACTTCGAGGCTGCCATACAGGTTGGCACAGAAGACCTACAGGTTCTAAGCGCCGTCTACAGTCAGCTGGGGAATGCCTACTTCCACCTGCACGACTACAGCAAAGCTCTGGAGTTCCACCACCATGATCTTACACTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017311_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0206410=MAS20=PU(21.8=81.0)
C2:
PF0206410=MAS20=PD(76.9=80.0),PF134241=TPR_12=PU(62.5=46.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCTTCGATGAGACAAACT
R:
AGAGCTTTGCTGTAGTCGTGC
Band lengths:
342-649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]