GgaEX0002552 @ galGal3
Exon Skipping
Gene
ENSGALG00000002090 | GPSM2
Description
NA
Coordinates
chr8:1313601-1327639:+
Coord C1 exon
chr8:1313601-1313614
Coord A exon
chr8:1321240-1321545
Coord C2 exon
chr8:1327418-1327639
Length
306 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTGTTCCCTTTGCAGGAA
3' ss Score
12.9
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AACGGCGGCAGCAG
Seq A exon
GAACGCAGCTGAATGGAGCTGAAAGGGCCACAGATGAAAGAACTTGAACGCGTTTCTGACAGTTTAAGATGTGTCTGACAGTGACTTGCTTACCTTAGTAACAAAGAAGAGTATTTCAACAGCAGCTTAGGATACCTGTGTGCCAACTTAGTAACTGGAATGGTGTTCTGACAACAGTTCTCCGTAGCAAACTACTCGCCTTGCTACAGAACAGTAGCGTTTTCTCTACTGATAATGCAGCTCAATGGAGGAAAGTAATGTTTTGATAAGCATGCGAGAAGACCAGTCTTTTCATGTGCGATACAG
Seq C2 exon
GATGGAGGCTTCTTGCCTGGAGCTGGCTTTGGAAGGTGAGCGCCTCTGTAAAGCAGGAGATTGCCGAGCTGGTGTGTCTTTCTTTGAAGCAGCTGTTCAGGTTGGAACTGAAGACTTGAAAACACTCAGTGCTATTTACAGCCAGCTAGGCAATGCCTATTTCTACTTGCATGAATATGCAAAGGCCTTGGAATACCATCACCATGATTTAACTCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002090-'1-7,'1-2,11-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0051523=TPR_1=WD(100=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event