RnoEX0039707 @ rn6
Exon Skipping
Gene
ENSRNOG00000012149 | Gpsm2
Description
G-protein signaling modulator 2 [Source:RGD Symbol;Acc:1560967]
Coordinates
chr2:211513401-211527919:-
Coord C1 exon
chr2:211527818-211527919
Coord A exon
chr2:211519667-211519970
Coord C2 exon
chr2:211513401-211513622
Length
304 bp
Sequences
Splice sites
3' ss Seq
TCTTGTATTCCTTTTTGCAGAAA
3' ss Score
9.79
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CGGGGACCAGCCTTGGGGAAGCGCGGCGATCCCCAGTCTGCGGTCGGAGGCGCTCATCCCTGAAGCGGCTCCGCGTTCCCAGGAGCCTCCCGCCGGAGGGAG
Seq A exon
AAATGTTGCTGAAGCGCTGCTGAAGGGGCCACAGATGCAAGGATTTGGGACACGTTTGAACCTTTAAGCTGTCTGACATTGACCTCCTTTCATTATTAATAAAGAAGAAGCAGGAGCTTAGGATATATTAACACCAACTCATTAATGTACTAACCGGACAGTGCTCTGCAAACCCCACTGCGCAGTAAAGGACTGGACTGGCCCAGGACACAATCATTTCGCATTTCCTCAGCTTATAATATGACTGGATGGAGGGAAATTTGATGAGCATGAGGGAAGACCATTCCTTTCATGTCCGCTACAG
Seq C2 exon
AATGGAAGCTTCTTGCCTCGAGCTGGCCTTGGAAGGAGAACGTCTGTGTAAATCAGGGGACTGCCGCGCTGGCGTTTCGTTTTTTGAAGCCGCGGTTCAAGTTGGAACTGAAGACCTGAAAACGCTCAGTGCTATTTACAGCCAGCTGGGCAACGCTTACTTCTACTTACACGACTACGCCAAGGCGCTAGAGTACCACCACCATGACTTAACCCTGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012149_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134141=TPR_11=WD(100=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCGATCCCCAGTCTG
R:
CTCGCCAGGGTTAAGTCATGG
Band lengths:
302-606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]