BtaEX0016210 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017124 | GPSM2
Description
Bos taurus G-protein signaling modulator 2 (GPSM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192355]
Coordinates
chr3:34571057-34599147:-
Coord C1 exon
chr3:34598498-34599147
Coord A exon
chr3:34580242-34580544
Coord C2 exon
chr3:34571057-34571278
Length
303 bp
Sequences
Splice sites
3' ss Seq
ATCTTGTATTCCTTTTGCAGAAA
3' ss Score
10.02
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAAGAAACGGGAGGGCAGGAAAGTATTAATAACTTCGCTTTGGTGGTTGAGGACAGACCCTTGAGCAACGGAGGGACTAAGAGCCCACAGGCCCTCCCTCAACCTGACACGCAGTGCCCAGCCCAGCCCGGGGGGCGGAGGCAGCGCGCCGATCGCCCCGCCTCCCGCCGGCCATTGGCGGGTCCGAAAGACGCGGGGCGTCGTCGGTTTGAATGGGCGCGCCTGGAGCTGGGCGCAGGCGCAGACGAGGGGCGCGGTAGCGGGCGGGCGGTGCTGCGGGACCCTTGCGTGGCGGCCGACGCTGGGGGCGGTGAGGAGGGATCGGGACTTCTGGCCCACGTGACCTGGGGGCGGGGGGCACGCGCCGGCCTCCCGCGGTGCCTCCGCTTAGGGACCTGCCGCGGGAGCGGCCGCTGCCACCCGCCTGTTGCGCAGGTGGCTTCTGCTGCTGCAGCTTCGCCGTCTCCGCCGCGCTCCCTACACTCGCCGGCCCCCGGGAG
Seq A exon
AAATGTTGCTGAAGTGCTGCTGAAAGGGCCAGAGATGCAAGGATTTGGGACACATTTTGAACCTTTAAGCTGTCTGACATTGACCTCCTTTCATTATTAATAAAGAAGAAGCAGGAGCTTAGGATGTATTAACACCAACTCATTAATATACTAACCGGACAATGTTCTGCAGCAATTCTACATTGTAGAGCTGGATTGGCACAAAATAAAATAATTTCTTAGTATACCCAGCTTATAATATGACTCGATGGAGGAAAATTTGATAAACATGAGAGAAGACCATTCTTTTCATGTTCGTTACAG
Seq C2 exon
AATGGAAGCCTCTTGCCTCGAACTGGCCTTGGAAGGGGAGCGTCTGTGTAAATCTGGAGACTGCCGTGCTGGTGTGTCATTCTTTGAAGCTGCAGTTCAAGTTGGAACTGAAGACTTAAAAACTCTTAGCGCTATTTACAGCCAGCTGGGCAATGCTTATTTCTATTTGCATGATTATGCCAAAGCACTGGAATACCATCATCATGATTTAACTCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017124_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134141=TPR_11=WD(100=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGGATCGGGACTTCTG
R:
AAATAAGCATTGCCCAGCTGG
Band lengths:
350-653
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development