HsaEX0028468 @ hg19
Exon Skipping
Gene
ENSG00000121957 | GPSM2
Description
G-protein signaling modulator 2 [Source:HGNC Symbol;Acc:29501]
Coordinates
chr1:109419359-109439707:+
Coord C1 exon
chr1:109419359-109419850
Coord A exon
chr1:109427897-109428200
Coord C2 exon
chr1:109439486-109439707
Length
304 bp
Sequences
Splice sites
3' ss Seq
ATCTTGTATTCCTTTTGCAGAAA
3' ss Score
10.02
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGTCTGAAGAAGAAAGAAGAGGACAGGAAAGAAACTTCAGTCTGAGGGTTGAGGACACGTCCCGGAGCAGAGGAGGACCAAGCTCCCAAGCCCCCTGTCACCTTGACACGCAGACGGTTCCCCAGGACTGCGAAGAGGGGGGCAACCAGCGCCCCGCCCCGCCCCGCTGCGCCGCCCGCCATTGGCCGGTCCGAAAGACGCGGGGCGTTGTCGGTTTGAATGAGAGCGCCTGGAGCCGGGGCGCAGGCGCAGAGGAGGGCGGTGTTGAGACCGGCGGAGCGGCGGGACCCCTAGGTGGCGGAGGGACGCTCCGGGAAAGCGAGGGGCGCTACGAGCTCTGGCCCACGTGACCTGCCGGGGGCGGGAGCAGGGGGCGCGCCGGCCTCCTGCGGTGCCCCTGCCTTGGGGAGGGGCCGTGACCACCCGTCTGTCGCCCGAGGCGGCCGCCGCTGCACCTTCACCGCGTACCCGGGACCCGCCCGCCCGCGGGAG
Seq A exon
AAATGTTGCTGAAGTGCTGCTGAAAGGGCCAGAGATGCAAGGATTTGGGATACATTTTGAACCTTTAAGCTGTCTGACATTGACCTCCTTTCATTATTAATAAAGAAGAATCAGGAGCTTAGGATGTATTAACACCAACTCATTAATATACTAACCGGACAATGTTCTACAAACAATTCTACATTGTAAAGGACTGGATTGGCACAAAATAAAATAATTTTATTTTATTCAGCTTATAATATGACTCGATGGAGGAAAATTTGATAAGCATGAGAGAAGACCATTCTTTTCATGTTCGTTACAG
Seq C2 exon
AATGGAAGCTTCTTGCCTAGAGCTGGCCTTGGAAGGGGAACGTCTATGTAAATCAGGAGACTGCCGCGCTGGCGTGTCATTCTTTGAAGCTGCAGTTCAAGTTGGAACTGAAGACCTAAAAACACTTAGCGCTATTTACAGCCAGTTGGGCAATGCTTATTTCTATTTGCATGATTATGCCAAAGCATTAGAATATCACCATCATGATTTAACCCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121957-'1-9,'1-5,5-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0206410=MAS20=PU(21.9=84.2)
C2:
PF134141=TPR_11=WD(100=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGAATGAGAGCGCCTGGA
R:
CGCGGCAGTCTCCTGATTTAC
Band lengths:
347-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)