HsaALTA0003784-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000121957 | GPSM2
Description
G-protein signaling modulator 2 [Source:HGNC Symbol;Acc:29501]
Coordinates
chr1:109419359-109428200:+
Coord C1 exon
chr1:109419359-109419850
Coord A exon
NA
Coord C2 exon
chr1:109428129-109428200
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
AATAATTTTATTTTATTCAGCTT
3' ss Score
5.5
Exon sequences
Seq C1 exon
TGTCTGAAGAAGAAAGAAGAGGACAGGAAAGAAACTTCAGTCTGAGGGTTGAGGACACGTCCCGGAGCAGAGGAGGACCAAGCTCCCAAGCCCCCTGTCACCTTGACACGCAGACGGTTCCCCAGGACTGCGAAGAGGGGGGCAACCAGCGCCCCGCCCCGCCCCGCTGCGCCGCCCGCCATTGGCCGGTCCGAAAGACGCGGGGCGTTGTCGGTTTGAATGAGAGCGCCTGGAGCCGGGGCGCAGGCGCAGAGGAGGGCGGTGTTGAGACCGGCGGAGCGGCGGGACCCCTAGGTGGCGGAGGGACGCTCCGGGAAAGCGAGGGGCGCTACGAGCTCTGGCCCACGTGACCTGCCGGGGGCGGGAGCAGGGGGCGCGCCGGCCTCCTGCGGTGCCCCTGCCTTGGGGAGGGGCCGTGACCACCCGTCTGTCGCCCGAGGCGGCCGCCGCTGCACCTTCACCGCGTACCCGGGACCCGCCCGCCCGCGGGAG
Seq A exon
NA
Seq C2 exon
CTTATAATATGACTCGATGGAGGAAAATTTGATAAGCATGAGAGAAGACCATTCTTTTCATGTTCGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121957-1-6,1-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGAGAGCGCCTGGAGC
R:
TCAAATTTTCCTCCATCGAGTCA
Band lengths:
307-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)