HsaALTA0003784-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000121957 | GPSM2
Description
G-protein signaling modulator 2 [Source:HGNC Symbol;Acc:HGNC:29501]
Coordinates
chr1:108876737-108885578:+
Coord C1 exon
chr1:108876737-108877228
Coord A exon
NA
Coord C2 exon
chr1:108885507-108885578
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
AATAATTTTATTTTATTCAGCTT
3' ss Score
5.5
Exon sequences
Seq C1 exon
TGTCTGAAGAAGAAAGAAGAGGACAGGAAAGAAACTTCAGTCTGAGGGTTGAGGACACGTCCCGGAGCAGAGGAGGACCAAGCTCCCAAGCCCCCTGTCACCTTGACACGCAGACGGTTCCCCAGGACTGCGAAGAGGGGGGCAACCAGCGCCCCGCCCCGCCCCGCTGCGCCGCCCGCCATTGGCCGGTCCGAAAGACGCGGGGCGTTGTCGGTTTGAATGAGAGCGCCTGGAGCCGGGGCGCAGGCGCAGAGGAGGGCGGTGTTGAGACCGGCGGAGCGGCGGGACCCCTAGGTGGCGGAGGGACGCTCCGGGAAAGCGAGGGGCGCTACGAGCTCTGGCCCACGTGACCTGCCGGGGGCGGGAGCAGGGGGCGCGCCGGCCTCCTGCGGTGCCCCTGCCTTGGGGAGGGGCCGTGACCACCCGTCTGTCGCCCGAGGCGGCCGCCGCTGCACCTTCACCGCGTACCCGGGACCCGCCCGCCCGCGGGAG
Seq A exon
NA
Seq C2 exon
CTTATAATATGACTCGATGGAGGAAAATTTGATAAGCATGAGAGAAGACCATTCTTTTCATGTTCGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121957-2-9,2-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGAGAGCGCCTGGAGC
R:
TCAAATTTTCCTCCATCGAGTCA
Band lengths:
307-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development