RnoEX0039706 @ rn6
Exon Skipping
Gene
ENSRNOG00000012149 | Gpsm2
Description
G-protein signaling modulator 2 [Source:RGD Symbol;Acc:1560967]
Coordinates
chr2:211519667-211527919:-
Coord C1 exon
chr2:211527818-211527919
Coord A exon
chr2:211525535-211525782
Coord C2 exon
chr2:211519667-211519970
Length
248 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTATCTTTTGCAGTCT
3' ss Score
10.39
5' ss Seq
CTGGTACTG
5' ss Score
4.41
Exon sequences
Seq C1 exon
CGGGGACCAGCCTTGGGGAAGCGCGGCGATCCCCAGTCTGCGGTCGGAGGCGCTCATCCCTGAAGCGGCTCCGCGTTCCCAGGAGCCTCCCGCCGGAGGGAG
Seq A exon
TCTGGTGGTTGAACCCCGTTTCTTACCCTCACATGCTTCCTACTCTGCTGAGCTACACCCCCAGCCTCAGTCTCAGGCTCTTTCTCAGGCAAGCAATGGAAGGACGATTGTTGGACATCCGTGATGCACAGAACCGTGCGCGGCTGTTCTGAGTGGCCAGAGAGGCTCCGGAGTCAGTTCTGAGTTTTTCTGCAGTGTTTTTCACCACCTTCTCCTCACCCTGCCCTGTGTGATGCTGCCTGTTTCTG
Seq C2 exon
AAATGTTGCTGAAGCGCTGCTGAAGGGGCCACAGATGCAAGGATTTGGGACACGTTTGAACCTTTAAGCTGTCTGACATTGACCTCCTTTCATTATTAATAAAGAAGAAGCAGGAGCTTAGGATATATTAACACCAACTCATTAATGTACTAACCGGACAGTGCTCTGCAAACCCCACTGCGCAGTAAAGGACTGGACTGGCCCAGGACACAATCATTTCGCATTTCCTCAGCTTATAATATGACTGGATGGAGGGAAATTTGATGAGCATGAGGGAAGACCATTCCTTTCATGTCCGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012149_MULTIEX1-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCCAGTCTGCGGTCG
R:
AATGATTGTGTCCTGGGCCAG
Band lengths:
293-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]