DreEX0038058 @ danRer10
Exon Skipping
Gene
ENSDARG00000103862 | hoxa3a
Description
homeobox A3a [Source:ZFIN;Acc:ZDB-GENE-000823-3]
Coordinates
chr19:20181999-20205177:+
Coord C1 exon
chr19:20181999-20182158
Coord A exon
chr19:20189252-20189362
Coord C2 exon
chr19:20204619-20205177
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCGTTTTCTTTCTCTGTAGACC
3' ss Score
10.81
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATATGTATCATAGTCACGCAGCCGTCATTCACTCTTTCACTTCAGCACTTTTCAGAAATTTAGCTTTTTTGTAATAGCCTACATTTCGTCAACAGAAAAAAACAGTTGTTTCAACAGGATGATGTGTCTCTTCGGGACTATCTTCAGATAACAATGTAAG
Seq A exon
ACCGTAGAGGTGTTTCTTGACTGCACCAGCAACTGCTTCTAACAAGCCAGATTGCTATGGACTGGAAACGCACCGACCGGATTTACTCGGGCGACCGAGGGCCAGCTCTTG
Seq C2 exon
GTTTACCCGTAGAGCCCATTGGCGAAGAGGTGTCACGTGACTACGTTGAGCCAATGTTCTTCTACAAAGGTGTCAGGACCTTGTCAGAAAGTGAAATAAACATTGGGAAACGGCGAGATGCAAAAGGCAACCTACTGCGACGGCTCGGCAATTTACAGTGGCCTCCCTTATCAAAGCGCAAACGGTTTAGGTTATGATGCCAGTCAGCAGCAGTATCTCCAGGCCCTTCATGCGGAAAGTGAGTACCATCGACCGGCCTGCTCTCTGCAGTCCCCTGGTATATCTGCAGGTCTGCACACATCCAATGAAATGTCCGAGGTCTGCCAACAAATTAACGGAACACAAGCTACAGTAACAGACACCTCCGACAACAAACAGCCCCCTACTGCCCCTTCTGGACCATCGTCCCCCAGTTCCCTGAATCAAATTCCAAACATTGATTCCGCCGCCAAGAATCCAGTCCACGTATCACCAACACCATCCACAAGGAAACACATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103862_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.696
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGATGTGTCTCTTCGGGA
R:
CTGCTGCTGACTGGCATCATA
Band lengths:
258-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]