MmuEX7033879 @ mm10
Exon Skipping
Gene
ENSMUSG00000079560 | Hoxa3
Description
homeobox A3 [Source:MGI Symbol;Acc:MGI:96175]
Coordinates
chr6:52183708-52213115:-
Coord C1 exon
chr6:52213040-52213115
Coord A exon
chr6:52200837-52200938
Coord C2 exon
chr6:52183708-52183790
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCCATTTGACTCTTTTGCAGGCT
3' ss Score
8.22
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AGGACAATTCGTCTCTTGGGCTGCCGAAGCGACAGCTGTCAGAGAGGCAGAAGCTTCTGGGAGCCGCGGTCTGAAG
Seq A exon
GCTACGTGTGCTGCCTGGTCATTCAAAGTGTCAATTTTAGGTCCAGAAGTGTCCAAACCACAAGTTCTCAAAACTCTGAAAAATGGCTCCCTCCATGTTAAG
Seq C2 exon
AGTGCCTGGACACTGGAAAAAAAGATTCCCTGAGCACCTGGAACTGGAGACCATTCCTGGTTCAGATTTAAACATCTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079560-'2-4,'2-0,4-4=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATTCGTCTCTTGGGCTGC
R:
CCAAAGATGTTTAAATCTGAACCAGG
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types