DreEX0039262 @ danRer10
Exon Skipping
Gene
ENSDARG00000086724 | im:7151449
Description
im:7151449 [Source:ZFIN;Acc:ZDB-GENE-041111-283]
Coordinates
chr6:47493749-47504835:-
Coord C1 exon
chr6:47504659-47504835
Coord A exon
chr6:47497880-47498053
Coord C2 exon
chr6:47493749-47493835
Length
174 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTTTCTGTTGCCAGCTA
3' ss Score
8.2
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TGATAACATGTGATAATCCAACTCCTCCTGAACATGGCAATGTGATGTTTCGTAGTCCTGTTCTATATAATGATGTTATCAAATATTCATGCCAAGAAAACTACACCCTTGTTGGAAACAGATCCCTTACCTGTGGGGATGATTGGGATTATAATTTTCCACCTCCAAAATGTGAAG
Seq A exon
CTATTGAATGTGGAGTTCCTACTATTAAATTTGGTAACCAGACTGAAGGAAATCCTCCATACCTACATAAAAGCCAAGCCACTTTTGAATGCTTGCCAGGTTACAGGATGAATGGTTCGGCCACATCAGTGTGTGAGGAGAGAGGCTGGTCTGCACTGCCTGAATGTGTTAAAG
Seq C2 exon
CTATCCTACTACAGCCAGAAGAAACCACCACAGTTGTTGCATCAACAGTCACCACAGACATTGCAACAACAAACGCAGTATTCTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086724-'5-8,'5-6,7-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.7)
A:
PF0008415=Sushi=WD(100=89.8),PF0200911=Rifin_STEVOR=PU(31.5=66.1)
C2:
PF0243010=AMA-1=FE(18.8=100),PF0200911=Rifin_STEVOR=FE(20.9=100),PF133471=MFS_2=FE(29.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTCCTCCTGAACATGGC
R:
CAGAATACTGCGTTTGTTGTTGCA
Band lengths:
245-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]