DreEX0039264 @ danRer10
Exon Skipping
Gene
ENSDARG00000086724 | im:7151449
Description
im:7151449 [Source:ZFIN;Acc:ZDB-GENE-041111-283]
Coordinates
chr6:47493749-47498053:-
Coord C1 exon
chr6:47497880-47498053
Coord A exon
chr6:47496484-47496657
Coord C2 exon
chr6:47493749-47493835
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTGTCAATTCTCAGCAA
3' ss Score
7.08
5' ss Seq
TGTGTACGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
CTATTGAATGTGGAGTTCCTACTATTAAATTTGGTAACCAGACTGAAGGAAATCCTCCATACCTACATAAAAGCCAAGCCACTTTTGAATGCTTGCCAGGTTACAGGATGAATGGTTCGGCCACATCAGTGTGTGAGGAGAGAGGCTGGTCTGCACTGCCTGAATGTGTTAAAG
Seq A exon
CAACGCCCACTCCAGTATCCCATTCGTCTGTAAAGATGTCAATCTCAATTACACCCTGTGATGTTATCACCTTCGCTGCCAATCGGAATGGGAGCTCAAAGTTTGAAAGGGACGCGAATGGGGATGCTCATTCTGCTTGCTCTGTCTTGCCTGCTTTCTCTTTGCCTTTTATGT
Seq C2 exon
CTATCCTACTACAGCCAGAAGAAACCACCACAGTTGTTGCATCAACAGTCACCACAGACATTGCAACAACAAACGCAGTATTCTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086724_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.167
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=89.8),PF0200911=Rifin_STEVOR=PU(31.5=66.1)
A:
PF0243010=AMA-1=FE(37.7=100),PF0200911=Rifin_STEVOR=PU(38.8=91.5),PF133471=MFS_2=PU(16.3=27.1)
C2:
PF0243010=AMA-1=FE(18.8=100),PF0200911=Rifin_STEVOR=FE(20.9=100),PF133471=MFS_2=FE(29.6=100)
Main Inclusion Isoform:
ENSDART00000128700fB3277
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGTTCCTACTATTAAATTTGG
R:
ACTGCGTTTGTTGTTGCAATGT
Band lengths:
245-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]