DreEX0040175 @ danRer10
Exon Skipping
Gene
ENSDARG00000028507 | itgb4
Description
integrin, beta 4 [Source:ZFIN;Acc:ZDB-GENE-030131-7209]
Coordinates
chr8:13107997-13110958:+
Coord C1 exon
chr8:13107997-13108158
Coord A exon
chr8:13108415-13108528
Coord C2 exon
chr8:13110809-13110958
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTGGCTTGGCTGCCTCTCAGGGG
3' ss Score
4.95
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GAGGCTCAACTACACACAGATATGATGTAAGAGACGGTGGACTTCTCAAAGAAGACGTGATCCTGAGAAAACGCTCTGAAAACAGGCATTACACAGAAGGTGATGGTGTGAGGGACTCAATCGTAATGGGAAACCTGTCTGGTGGACTTTTGGACAATTTAG
Seq A exon
GGGTCTCTAGCTTCAGCCAGACTACATCTACCAGCTACAGCTTGAGCTCCAGAGCTCGTACTCAGTCTGAAGATATCAACGATGCTCTGCTGAACCTGGATAGTGTTCTTCAGG
Seq C2 exon
AATCGCGCTTCACCCCGGGTGTTCCCGCGACTCCCAGCAGACTGGTGTTTTCAGCTCTGGGCCACACGGCTCTCAAAGTGAGCTGGCAGGAGCCACACTGCGAGTCTGATGTACTGGGATACTGCGTCCTTTACCAGCTCATCAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028507_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=0.179 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004116=fn3=PU(48.8=80.4)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGATCCTGAGAAAACGCT
R:
ATGAGCTGGTAAAGGACGCAG
Band lengths:
250-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]