DreINT0083308 @ danRer10
Intron Retention
Gene
ENSDARG00000028507 | itgb4
Description
integrin, beta 4 [Source:ZFIN;Acc:ZDB-GENE-030131-7209]
Coordinates
chr8:13107997-13110958:+
Coord C1 exon
chr8:13107997-13108158
Coord A exon
chr8:13108159-13110808
Coord C2 exon
chr8:13110809-13110958
Length
2650 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATG
5' ss Score
7.57
3' ss Seq
TGAACTGCTCGTGCCCTCAGAAT
3' ss Score
9.31
Exon sequences
Seq C1 exon
GAGGCTCAACTACACACAGATATGATGTAAGAGACGGTGGACTTCTCAAAGAAGACGTGATCCTGAGAAAACGCTCTGAAAACAGGCATTACACAGAAGGTGATGGTGTGAGGGACTCAATCGTAATGGGAAACCTGTCTGGTGGACTTTTGGACAATTTAG
Seq A exon
GTAATGTGAGCTTGATAGATCTGCCTCCACATAATTTCAAAACCAATCAAATTTGATGTAATGCCTGGCAAGGTGCAGCTTTTGGCAAGAATCCTCGGCTGACTCTCGCTTCATCCCCGCTCTTCTTTTTCTCCTCCTCCTCCTTCTCCCATTTGTCTTTTCTCTACACATTTTTCCCCTGCTGATTTCTCGTCATGCGACGGCTGCCTGCCAACCCTTTCCCTCCACACCCTGCCGTGGCTTGGCTGCCTCTCAGGGGTCTCTAGCTTCAGCCAGACTACATCTACCAGCTACAGCTTGAGCTCCAGAGCTCGTACTCAGTCTGAAGATATCAACGATGCTCTGCTGAACCTGGATAGTGTTCTTCAGGGTGAGTGAACCTGGAAACAACCACCAGTGCATCATGGGAGGCTACTTTGAAACTAGATGTCAATGTAAAGTGGTCAAATCATATATAAAAGTTTTGGTATACATTCAGTATAAAATGTTATTTTTATTATTATTTGTTTTAGATCAAAATTAAATACTTTTATTAAACTTTGTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATTTTATGTTATTTTATTTTTTTTATATAATAGTATATAATATTATATTATAATATATTATTTTATATTATATTATAATATATTATTTTATTTTATATTAATTATATTATATTATATTATATTATTTTATATAATATTATATAATATTATATTATTTAATTTTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATTTTATTTTATATTATATTATATTATATTATGTTATATTATATTATTTTATATTATATTATATTATATTATATTATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATGGCAGTTGCCAAAGGTGAATGAATGAATATTTTATTATGTCATAATATTATAAATGTACCATTCTCTATTAAATTTATATAAATACATATGTTGCATTTTAACAATGGTGGTCTTCAATTTTTTTTCAATTTCTTAATTTGTGTAATTATTTTGACACTAGAAGATTGAGATTATCGAATAGTGTTAAACATAATTATAATTTAATAAAATTGATGCATTCAGCAGATGTCTTTATTTTAAAAATAAAAAATAAAATTTGATATACATTTGCTGACAGACAGTTTGAGCTATTTATCAGAATTATGGGAATTAAATGCTATTAAATAGTATTTAATTGGATGAACATTTTTAGTCTTATGCCTTATCCAAAATATAAAAATACAAATAAATACAATCAGATCATTTACTTTAACCATTACTATTGGAATGTGAAGACTTTCAACCAGCACAACAAAACATGCTTCTGAAGACAATCACCTACTGCACCTTTAACATTTTAAATGTGATTACTAAATACATACAGTAGAAGTCAGAATTATTAGCCCCCCTTTGAATTTTTTTATTTTTTTAATATTTCCCAAATGATGTTTAACAGAGAAAGGAAATTTTCACAGTGTCTGATATTATTTTTTCTTCTGGAGAAAGCCTTGTTTGTTTCATTTTTGCTAGAAAAAAAAGCAGTTTTTGATTTTTCAAAAGCCATTTTAAGGTCAAAATTATTAAGCCCCTTTAAGCTATATATTTTTTAAATAGCCTACAGAACAAACCACTGTTATACAATAACTTGCCTAATTACCCTAACCTGCCTAGTTAACCTCATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATTGAATAAAATATTATTTACTGTCATCATGGCAAAGATAAAGTAAATCAGTTTTTGAGATAAGTTATTAAAACTATTATGTTTTGAAACATGTTGAAAAATCTTAAACAGAAATTGGGGGGGAAAATAAACAAGAGGGCTAATAATTCTGGCTTCAACTGTATATGGTACTTTTTAAATTGCATTATTTTTAAATCTACATCTATTATACTTGATTTTGACTCTTATAGGATATTCAGTTATTATAAGCTAAAATCATCTTTCAATATGTATCAATTCATCAGTTTACCAAGACACTGTTTAATTACTGTAAAAGTTGCTGAATCATCATAATAACAATATTTAATCTGGAAAAAAAACACTGAGGATAAAAGCATTAGAATTACTTTAAAAATGATATTAACTAAAATCTTTTTTTTTTTAAATGAACACATTCAAAACAAATTTATGAAAACATGTATGATTATTGTCTAGTTCACCTGGCAAGAACAAAATACAGTTTATCAAAAATGCTTGTGAGCATTAGCTAGTCACAGGAAAAGTATCAATAAAAACAGCTGAGCTACTGTCAAACTACTGAACTATGTAGGAAGTTTGTAGCGTCTCTGCTTTTACTTACACACTGACACACCTCAGCCAATTCCCCGCTGTTTTCCCAATGCTGAACCAATCAAGCAATCTGTGGCTGCAAAATGAAATGTGTGTGTTCTGCGGTTTGACATTGTGCCTTGTGAACTGCTCGTGCCCTCAG
Seq C2 exon
AATCGCGCTTCACCCCGGGTGTTCCCGCGACTCCCAGCAGACTGGTGTTTTCAGCTCTGGGCCACACGGCTCTCAAAGTGAGCTGGCAGGAGCCACACTGCGAGTCTGATGTACTGGGATACTGCGTCCTTTACCAGCTCATCAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028507:ENSDART00000029308:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=NA C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004116=fn3=PU(48.8=80.4)
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]