GgaINT0127637 @ galGal3
Intron Retention
Gene
ENSGALG00000002389 | E1C9G7_CHICK
Description
NA
Coordinates
chr18:4716688-4717739:-
Coord C1 exon
chr18:4717581-4717739
Coord A exon
chr18:4716744-4717580
Coord C2 exon
chr18:4716688-4716743
Length
837 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CTCCCTCCTCACCTGGCTCAGCC
3' ss Score
-8.93
Exon sequences
Seq C1 exon
AACACCTGCTGAATGGCCGCATGGATTACTTCTCCGGCAGCAGCAGCACGCTGACCAGGACAGCAAACACCAGCTACCACCAGCACGTGCAGCAGGAGCACAGGGTGATGGGGAGCTCCTCACTGACCAGAGACTACTCCACCATGATGGCGGGGCACG
Seq A exon
GTGAGTATGAGGTGGTGGGGACTGCTCTTCCATTCCATGGCCACCTTCACATCCATGCCCTGCAGATCCCTTTGGGGTGAGGGCTGTGTTTGCAGCCAAAGGGGCTGACAAATCAGAGAAATCGCAGCTCATGTCCTTGGAGGTTGGACTCGATGGTCCTTATGGGTACCTTCCAACTCAGAATGGTTCTATTATTCTACCACTGGTGTGGTAGGGCTTTGGTAAGGCTGCTCTCCTTCCAGACCACTCTGGAAAAGGGTGCCCATCCCTGACTTGGGAACAGGAGTCACATCCTTGTTTCCACACTGCAAAGCTTGTGTTGTTGCCCCTTACTATGTCTAGCAGATGATTCCCTTTCAGCTCCGTGCATGTACATCAGACTGGTGTTGACAAGAGGTTGTAAAGAACTTCAGATCTGATCCTTAGAAACCTCTCTCTGTGCAGGAGTCAGCACCTGGGCTGAACCCACTCTGACATCTTCTACGGTGTTTTTCTTTTTCTTTCTTTCTCTACGCTGGTCTGTAGATTACTCAGGGAGATTCCTTCCTCCCATCCTTGAAGATGCTGGGAGGAGAATCCCACAGCCCAGGGACGTGGGTTTCAGGAGCAGGGTAAAGGTGAAGGGTTACTACCCCAGCACTGGCTGTCGGGACTCTATAATCATGACCGATGGGTCCACGGGGACTTGCAAGTACATAGGTACAGCTTTGTCCAGTGCCTCCTTCCAGTCTCGCATCCCATAACCAGCCACACCGCTGGCCCTCTGTGAGCTGCTCCCCAAAACCCTTTCTCATGGCTTTCTGTGTGCCACACTGATCTCCCTCCTCACCTGGCTCA
Seq C2 exon
GCCTCCATCACACCACCTTTCCATTTGCAGGAAACTTCAGCTGTGTTCCAAGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389:ENSGALT00000003760:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.648 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCTGCTGAATGGCCG
R:
TGGCTTGGAACACAGCTGAAG
Band lengths:
214-1051
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]