GgaEX0003003 @ galGal3
Exon Skipping
Gene
ENSGALG00000002389 | E1C9G7_CHICK
Description
NA
Coordinates
chr18:4716040-4717739:-
Coord C1 exon
chr18:4717581-4717739
Coord A exon
chr18:4716882-4717055
Coord C2 exon
chr18:4716040-4716140
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTCTCTACGCTGGTCTGTAGATT
3' ss Score
5.18
5' ss Seq
TAGGTACAG
5' ss Score
4.67
Exon sequences
Seq C1 exon
AACACCTGCTGAATGGCCGCATGGATTACTTCTCCGGCAGCAGCAGCACGCTGACCAGGACAGCAAACACCAGCTACCACCAGCACGTGCAGCAGGAGCACAGGGTGATGGGGAGCTCCTCACTGACCAGAGACTACTCCACCATGATGGCGGGGCACG
Seq A exon
ATTACTCAGGGAGATTCCTTCCTCCCATCCTTGAAGATGCTGGGAGGAGAATCCCACAGCCCAGGGACGTGGGTTTCAGGAGCAGGGTAAAGGTGAAGGGTTACTACCCCAGCACTGGCTGTCGGGACTCTATAATCATGACCGATGGGTCCACGGGGACTTGCAAGTACATAG
Seq C2 exon
ATTCCAGGTTTCCACTGGGTGTCCCTGACATCCCCACGAGGTTGGTGTTCTCTGCTCTGGGACCCACCTCGCTGAAGGTGAGCTGGCAGGAGCCGCGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389-'32-36,'32-33,34-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.648 A=0.220 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAATGGCCGCATGGATTA
R:
CTCCTGCCAGCTCACCTTCAG
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]