RnoEX0045236 @ rn6
Exon Skipping
Gene
ENSRNOG00000005580 | Itgb4
Description
integrin subunit beta 4 [Source:RGD Symbol;Acc:2928]
Coordinates
chr10:104557228-104558333:+
Coord C1 exon
chr10:104557228-104557464
Coord A exon
chr10:104557614-104557772
Coord C2 exon
chr10:104558184-104558333
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTGTCCTGCCCTAGGCC
3' ss Score
9.97
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
AGCACCTGGTGAATGGCCGGATGGACTTTGCCTATCCAGGCAGTGCCAACTCCCTGCATAGGATGACTGCTGCCAACGTGGCCTATGGCACACATCTAAGCCCACACCAGACCCACCGAATGCTGAGCACGTCTTCTACCCTTACCCGGGACTACCACTCTCTGACGCGCACAGACCACTCTCAGTCAGGCACACTTCCCCGGGACTACTCCACTCTCACTTCCCTTTCCTCCCAAG
Seq A exon
GCCTCCCTCCTATCTGGGAAGATGGGAGGAGCAGGCTTCCGCTGTCCTGGACCCTTGGGTCCTGGAGCCGGGCTCAGATGAAGGGTGTGCCCGCATCCAGGGGCTCACCAGACTCTATAATCCTGGCCGGGCAGTCAGCAGCGCCCTCCTGGGGTACAG
Seq C2 exon
ATTCCCGTGGGGCTATGGGTGTGCCCGACACACCCACTCGGCTGGTGTTCTCCGCCCTGGGGCCCACATCTCTGAAGGTGAGCTGGCAGGAGCCACAGTGTGATCGAGCACTGCTGGGCTACAGCGTGGAATACCAGCTACTCAACGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005580_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.713 A=0.383 C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004116=fn3=PU(48.8=80.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAATGCTGAGCACGTCTTCT
R:
GTATTCCACGCTGTAGCCCAG
Band lengths:
255-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]