GgaEX0003003 @ galGal4
Exon Skipping
Gene
ENSGALG00000002389 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr18:4697081-4698829:-
Coord C1 exon
chr18:4698671-4698829
Coord A exon
chr18:4697972-4698145
Coord C2 exon
chr18:4697081-4697230
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTCTCTACGCTGGTCTGTAGATT
3' ss Score
5.18
5' ss Seq
TAGGTACAG
5' ss Score
4.67
Exon sequences
Seq C1 exon
AACACCTGCTGAATGGCCGCATGGATTACTTCTCCGGCAGCAGCAGCACGCTGACCAGGACAGCAAACACCAGCTACCACCAGCACGTGCAGCAGGAGCACAGGGTGATGGGGAGCTCCTCACTGACCAGAGACTACTCCACCATGATGGCGGGGCACG
Seq A exon
ATTACTCAGGGAGATTCCTTCCTCCCATCCTTGAAGATGCTGGGAGGAGAATCCCACAGCCCAGGGACGTGGGTTTCAGGAGCAGGGTAAAGGTGAAGGGTTACTACCCCAGCACTGGCTGTCGGGACTCTATAATCATGACCGATGGGTCCACGGGGACTTGCAAGTACATAG
Seq C2 exon
ATTCCAGGTTTCCACTGGGTGTCCCTGACATCCCCACGAGGTTGGTGTTCTCTGCTCTGGGACCCACCTCGCTGAAGGTGAGCTGGCAGGAGCCGCGCTGCGAGAAGGAGGTGCAGGGCTACAGCGTGCAGTACCAGCTGCTCAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.642 A=0.169 C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004116=fn3=PU(48.8=80.4)
Main Inclusion Isoform:
ENSGALT00000003760fB321
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAAACACCAGCTACCAC
R:
TCCATTGAGCAGCTGGTACTG
Band lengths:
249-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]