GgaINT0127638 @ galGal3
Intron Retention
Gene
ENSGALG00000002389 | E1C9G7_CHICK
Description
NA
Coordinates
chr18:4715991-4716743:-
Coord C1 exon
chr18:4716688-4716743
Coord A exon
chr18:4716142-4716687
Coord C2 exon
chr18:4715991-4716141
Length
546 bp
Sequences
Splice sites
5' ss Seq
CATGTGGGC
5' ss Score
0.71
3' ss Seq
GACCGTCCTATTTTGCTTCAGAT
3' ss Score
-9.37
Exon sequences
Seq C1 exon
GCCTCCATCACACCACCTTTCCATTTGCAGGAAACTTCAGCTGTGTTCCAAGCCAT
Seq A exon
GTGGGCTGATTAACTCTCACCACTGCTGTCACCGTGCTCTAATGAGCTGATCACATCATCGTCCCCTTCCCCCTCATTCCTAACAAGCTACTTGTTCTCATTCTCACCCCACAGGCTTTTGGAGGACTCTTGGGGAGAACGTGGGTCCCAGCCTTGAGCAGTCCCTGGAGGTGTTGGGTTGGTTTAGCTGTAGATCAGGGCTGTGCTTGCTCTGAAGACATCCACAAAGCATTTGGCAGACTGGACAGAGAGCTGTGGGGTAAGCCACGAGGGCAACACACAGCACCAGGTCCGTGGCCAAAGGGCTGTGAAGCTTACTTTGCCTTGTCCCATGCAAGGGCGGCACCCCAAGGCCACAGGACATCCCTGTAGGTGTGCAGAGTCCCCCTGCAGACAGGCCTAGCTTGCAGAGAGGACATCTCCCCACGTTCTCCCCATGTTGTCCCTGGACCATCAGGACCATCCCACGCTTGCGTGTGCTGCTGCCTCCTCTCACCCAGCCCAGTTAAACCCAAATCCCTGCTGTGACCGTCCTATTTTGCTTCA
Seq C2 exon
GATTCCAGGTTTCCACTGGGTGTCCCTGACATCCCCACGAGGTTGGTGTTCTCTGCTCTGGGACCCACCTCGCTGAAGGTGAGCTGGCAGGAGCCGCGCTGCGAGAAGGAGGTGCAGGGCTACAGCGTGCAGTACCAGCTGCTCAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389:ENSGALT00000003760:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004116=fn3=PU(48.8=80.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCATCACACCACCTTTC
R:
TCCATTGAGCAGCTGGTACTG
Band lengths:
206-752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]