DreEX0040361 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21303534-21311579:+
Coord C1 exon
chr8:21303534-21303698
Coord A exon
chr8:21305701-21305890
Coord C2 exon
chr8:21311496-21311579
Length
190 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTTACCTTCTTCAGCTG
3' ss Score
8.6
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTCATCAATAAGATAGTGTACTTGGTGAGCTTTGTGGGAAACAACGGCACCTTCATCATGGGTTATAAAGCCATGGTAATGGATGTAGAATTCCTGTATCATGTGGCTTACGTGTTAACCAGCAGTCTGGGGCTGTTTGTCCATGAGTTCTTCTACAGCATATTG
Seq A exon
CTGTTTGATCTGATCTACCGTGAGGAGACACTGTTTAACGTCATCAAGAGTGTGACCCGTAACGGCCGCTCTATTCTCCTCACTGCTGTCCTGGCCATCATTCTGGTCTACCTGTTCTCCATCGTCGGCTTTCTCTTCCTCAGGAATGACTTCATTATGGAAGTCGACCACCTTGCTAGCCCAGCTCCAG
Seq C2 exon
GAGATACTGAAAGCTTTATGAGCAGCTGCAGTTCTGATGGAATTGACTGCACAGAGGAAACTGGTCTCCTTGCTCCAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'61-62,'61-61,62-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(23.9=100)
A:
PF0052026=Ion_trans=FE(27.9=100)
C2:
PF0052026=Ion_trans=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATAAGATAGTGTACTTGGTGAGC
R:
CTTCAGCTGGAGCAAGGAGAC
Band lengths:
245-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]