GgaEX7010846 @ galGal4
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4564383-4566223:-
Coord C1 exon
chr26:4566059-4566223
Coord A exon
chr26:4565389-4565581
Coord C2 exon
chr26:4564383-4564478
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTGCTCCTGGGTCCTTTCAGCTG
3' ss Score
8.42
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
CTGACCAACAAGATTGTGTTTGTGGTGAGCTTTGTGGGTAACCGTGGGACCTTCATCCGAGGCTACAAGGCCATGATCATGGACGTGGAGTTTCTTTACCACGTTGGCTACATCCTGACGAGCGTCCTGGGGCTCTTTGTGCATGAACTCTTCTACAGCATCCTG
Seq A exon
CTGTTTGACTTGATCTACCGTGAGGAGACCTTGTTTAATGTCATCAAGAGCGTGACGCGAAACGGGCGCTCCATCCTGCTGACTGCCCTCCTGGCGCTCATCCTTGTCTACCTCTTCTCCATTGTGGGCTTCTTGTTCCTGAAGGATGACTTCATCCTGGAGGTGGACCGGCTGCCGGACAGCAAAGCCCAAG
Seq C2 exon
ATGACCCCTTGGGGATGCAAAGGAACATGGAGACCTTCATGGAGTCCTGCAGTGGTGACAAAATTAGCTGCTCTGCTGTGCCCACTGCCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'57-64,'57-62,59-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(23.9=100)
A:
PF0052026=Ion_trans=FE(28.3=100)
C2:
PF0052026=Ion_trans=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACAAGATTGTGTTTGTGGTG
R:
GGCACAGCAGAGCAGCTAATT
Band lengths:
244-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]