DreEX0040432 @ danRer10
Exon Skipping
Gene
ENSDARG00000033707 | jade1
Description
jade family PHD finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5648]
Coordinates
chr17:26822352-26824374:+
Coord C1 exon
chr17:26822352-26822519
Coord A exon
chr17:26822629-26822745
Coord C2 exon
chr17:26823841-26824374
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCTCTTTATCTCTAGGTA
3' ss Score
12.69
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
GCGTGTTATGGTATACTGAAGGTCCCTGAGGGCAGCTGGCTTTGCCGTACCTGTGCGCTGGGTATTTTTCCCAAATGCCACCTGTGCCCTAAAAAAGGCGGAGCCATGAAACCCACCCGCAGTGGCACCAAGTGGGTCCACGTCAGCTGTGCCCTCTGGATACCTGAA
Seq A exon
GTAAGCATTGGTAACCCTGAGAAGATGGAGCCTATCACTAATGTGTCTCATATACCCAGCAACAGATGGGCTCTAATATGCTGCCTGTGTAAAGAGAAGACAGGAGCTTGTATTCAG
Seq C2 exon
TGTTCTGCCAAAAGTTGCCGTGTGGCGTTCCACGTGACCTGTGGTCTGCATTGTGGGCTGAAGATGAACACGATCCTCACAGAGGCGGATGAAGTCAAGTTCAAGTCATTTTGTCCCAAGCACTCTGGCCTGGATTGGAACGAGGAAGAGGGCGATGATGACAGACCTGTGAAGGTCCCAACCAGGGAAGACAGAAGCAGAAATAGAGGAATAGATTTCTCTGCTTCTTCCCAAACCAGACTCTCGCAGAACCCAGAGGAGACCAGACTCAGTGAGCGAAAGCTTCGAGTACAGCAGCTGGAGGACGAGTTCTATCGCTTCGTCGCTGCTGATGAGGTTGCCGAACATCTGCAGCTTCCTCTTGAGATGGTGGACTTCTTGTTTCAATACTGGAAGTTGAAAAGAAAGGTGAACTTTAACCAGCCCCTCATCATGCCGAAGAAAGAGGAGGAAGACAGTCTTGCCCGACGAGAACAGGAAGTGCTTTTAAGGCGACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033707-'16-11,'16-10,17-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.216
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(24.0=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
A:
PF138321=zf-HC5HC2H_2=FE(33.6=100)
C2:
PF138321=zf-HC5HC2H_2=PD(35.4=22.5)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGCCACCTGTGCCCTAA
R:
CTTCCTCGTTCCAATCCAGGC
Band lengths:
245-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]