RnoEX0045529 @ rn6
Exon Skipping
Gene
ENSRNOG00000014066 | Jade1
Description
jade family PHD finger 1 [Source:RGD Symbol;Acc:1306920]
Coordinates
chr2:128497239-128501819:+
Coord C1 exon
chr2:128497239-128497406
Coord A exon
chr2:128498377-128498493
Coord C2 exon
chr2:128501719-128501819
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGCCTATTTTGGATCTTTAGGTA
3' ss Score
8.19
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCTTGCTATGGAATCCTTAAGGTGCCAGAGGGCAGTTGGCTATGCCGTACATGTGCCCTGGGAGTTCAGCCAAAATGTTTGCTGTGTCCCAAGAAAGGCGGAGCTATGAAGCCTACCCGCAGTGGAACCAAGTGGGTCCATGTCAGCTGTGCCCTGTGGATCCCTGAG
Seq A exon
GTAAGCATTGGCAGCCCTGAGAAGATGGAGCCCATCACAAAAGTGTCCCACATTCCGAGCAGTCGATGGGCGCTTGTGTGCAGCCTCTGCAATGAGAAATTTGGGGCCTCCATACAG
Seq C2 exon
TGCTCTGTGAAGAACTGCCGGACAGCCTTCCATGTGACTTGTGCTTTTGACCGTGGCCTGGAGATGAAGACCATATTGGCAGAGAATGATGAAGTCAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014066-'23-11,'23-10,24-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=NA
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(20.7=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(29.4=57.1)
A:
PF138321=zf-HC5HC2H_2=FE(34.9=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATCCTTAAGGTGCCAGAGG
R:
TCTGCCAATATGGTCTTCATCTCC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]