DreEX0043441 @ danRer10
Exon Skipping
Gene
ENSDARG00000076306 | loxl3a
Description
lysyl oxidase-like 3a [Source:ZFIN;Acc:ZDB-GENE-070818-2]
Coordinates
chr14:5578282-5582087:-
Coord C1 exon
chr14:5581933-5582087
Coord A exon
chr14:5579497-5579847
Coord C2 exon
chr14:5578282-5578452
Length
351 bp
Sequences
Splice sites
3' ss Seq
TTTAACCAATTATATTTCAGCAC
3' ss Score
7.19
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GTATGGGTCCCATCTACATGAATGAGGTCCAGTGTGGTGGGGATGAGAAGAGTCTGTGGGACTGTCCTCATCAGAGTATCACTGCTGAAGACTGCAAACACACGGAGGACGCCTCTGTAATCTGCAACATTCCCTACATGGGCTTCGAGAAACTG
Seq A exon
CACCCTGGGTTGCCTTGATGGAAAACAGCGTATTTCATTCGTTCAGTCAGGAAGGCCCTCAAAAGTATGAATCTGCAACCGAAAATGCGACCTCCGGTGGACAGTAGCAGCCTCCAAAATTAGACAAATTCCGCATGAGGTGATTATCAATTAACAAATAACATAAACATTACAAATGTAAACATTAGGTGAGCAGGTTACATTGTAATCCAGTGTCCTAACAACACGCTACGTGATGGGATTTGCAGTGATAAGCACTTGGGCTGTTTGCACCAGAAGACACCCGACAGAAATTTAAATACAGCCATTAAGAAGCACAGAACAGTGCACTCACTGCACTCCAACAAAATG
Seq C2 exon
ATGCGGCTGACTGGGGGTCGGACGCGGTTGGAGGGGAGGGTGGAGCTGCTGCTTCCTGCAGGCGGTGGGGTGAGGGACTGGGGTTTGATCTGTGGGGACGGATGGACGTCTCGGGAGGCCATGGTAGTGTGCAGACAGCTGGGGTTGGGACATGCCAGCAGTGGCCTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076306-'8-9,'8-8,9-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(42.9=80.8)
A:
NO
C2:
PF0053013=SRCR=PU(50.0=93.0)
Main Inclusion Isoform:
ENSDART00000154992fB3611
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGGGTCCCATCTACATGAA
R:
CACTGCTGGCATGTCCCAAC
Band lengths:
318-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]